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S# Alleles Epitopes No. Target Protein Region Length HTL Epitope Scores Percentile rank IFN Status +/- IFN Score
1 HLA-DRB3*02:02 1 RNA-dependent RNA-polymerase (RdRp) 1936-1950 15-mer IESKWLTNKASTIID 0.9511 0.01 NEGATIVE -0.6177
2 HLA-DRB3*02:02 2 RNA-dependent RNA-polymerase (RdRp) 1937-1951 15-mer ESKWLTNKASTIIDW 0.9379 0.03 NEGATIVE -0.5811
3 HLA-DRB5*01:01 3 RNA-dependent RNA-polymerase (RdRp) 561-575 15-mer GRMFAMQPGKQRQIQ 0.8891 0.04 NEGATIVE -0.2968
4 HLA-DRB5*01:01 4 RNA-dependent RNA-polymerase (RdRp) 560-574 15-mer VGRMFAMQPGKQRQI 0.8604 0.06 NEGATIVE -0.1495
5 HLA-DRB5*01:01 5 RNA-dependent RNA-polymerase (RdRp) 545-559 15-mer KEHIVSLTGKERELS 0.8440 0.08 NEGATIVE -0.3207
6 HLA-DRB4*01:01 6 RNA-dependent RNA-polymerase (RdRp) 1078-1092 15-mer RTSAINGEDIDRAVS 0.9078 0.08 NEGATIVE -0.0201
7 HLA-DRB4*01:01 7 RNA-dependent RNA-polymerase (RdRp) 1079-1093 15-mer TSAINGEDIDRAVSM 0.9096 0.08 NEGATIVE -0.5037
8 HLA-DRB1*15:01 8 RNA-dependent RNA-polymerase (RdRp) 922-936 15-mer GDPVVFYRSFYRRTP 0.9170 0.08 NEGATIVE -0.2372
9 HLA-DRB1*15:01 9 RNA-dependent RNA-polymerase (RdRp) 1687-1701 15-mer LNPKVLYFIGEGAGN 0.9213 0.08 NEGATIVE -0.1357
10 HLA-DRB5*01:01 10 RNA-dependent RNA-polymerase (RdRp) 962-976 15-mer VSFFKALLSIEKNER 0.8301 0.09 NEGATIVE -0.0945
11 HLA-DRB5*01:01 11 RNA-dependent RNA-polymerase (RdRp) 559-573 15-mer SVGRMFAMQPGKQRQ 0.8312 0.09 NEGATIVE -0.3647
12 HLA-DRB3*01:01 12 RNA-dependent RNA-polymerase (RdRp) 1014-1028 15-mer PNQLFSDSAIHYSRN 0.9115 0.10 NEGATIVE -0.3830
13 HLA-DRB1*03:01 13 RNA-dependent RNA-polymerase (RdRp) 1361-1375 15-mer VDKITSDQHIFSPDK 0.9523 0.10 NEGATIVE -0.2818
14 HLA-DRB4*01:01 14 RNA-dependent RNA-polymerase (RdRp) 1386-1400 15-mer MPTIKGQKTDQFLNK 0.8441 0.11 NEGATIVE -0.5876
15 HLA-DRB4*01:01 15 RNA-dependent RNA-polymerase (RdRp) 1077-1091 15-mer QRTSAINGEDIDRAV 0.8464 0.11 POSITIVE 0.1111
16 HLA-DRB3*01:01 16 RNA-dependent RNA-polymerase (RdRp) 1013-1027 15-mer SPNQLFSDSAIHYSR 0.8899 0.11 NEGATIVE -0.2443
17 HLA-DRB5*01:01 17 RNA-dependent RNA-polymerase (RdRp) 543-557 15-mer NDKEHIVSLTGKERE 0.8112 0.12 NEGATIVE -0.3005
18 HLA-DRB3*02:02 18 RNA-dependent RNA-polymerase (RdRp) 1935-1949 15-mer IIESKWLTNKASTII 0.8612 0.12 NEGATIVE -0.2873
19 HLA-DRB1*03:01 19 RNA-dependent RNA-polymerase (RdRp) 760-774 15-mer GLDEVKADYRLAVKM 0.9462 0.12 NEGATIVE -0.0335
20 HLA-DRB3*01:01 20 RNA-dependent RNA-polymerase (RdRp) 37-51 15-mer RPYLKNDNTAKVAIE 0.8420 0.14 NEGATIVE -0.2034
21 HLA-DRB3*01:01 21 RNA-dependent RNA-polymerase (RdRp) 538-552 15-mer RQEYLNDKEHIVSLT 0.8444 0.14 NEGATIVE -0.2531
22 HLA-DRB1*15:01 22 RNA-dependent RNA-polymerase (RdRp) 1194-1208 15-mer EKKLVPVYNRQILSK 0.8951 0.14 POSITIVE 0.0267
23 HLA-DRB1*15:01 23 RNA-dependent RNA-polymerase (RdRp) 1688-1702 15-mer NPKVLYFIGEGAGNW 0.8970 0.14 NEGATIVE -0.1863
24 HLA-DRB3*01:01 24 RNA-dependent RNA-polymerase (RdRp) 537-551 15-mer VRQEYLNDKEHIVSL 0.8323 0.15 NEGATIVE -0.3690
25 HLA-DRB4*01:01 25 RNA-dependent RNA-polymerase (RdRp) 1080-1094 15-mer SAINGEDIDRAVSMM 0.7927 0.16 NEGATIVE -0.2705
26 HLA-DRB3*01:01 26 RNA-dependent RNA-polymerase (RdRp) 1012-1026 15-mer LSPNQLFSDSAIHYS 0.8141 0.16 NEGATIVE -0.7499
27 HLA-DRB3*01:01 27 RNA-dependent RNA-polymerase (RdRp) 536-550 15-mer VVRQEYLNDKEHIVS 0.8241 0.16 NEGATIVE -0.1980
28 HLA-DRB1*03:01 28 RNA-dependent RNA-polymerase (RdRp) 827-841 15-mer WINTILDDIKTSAES 0.9368 0.16 NEGATIVE -0.3412
29 HLA-DRB1*03:01 29 RNA-dependent RNA-polymerase (RdRp) 828-842 15-mer INTILDDIKTSAESI 0.9368 0.16 NEGATIVE -0.4619
30 HLA-DRB3*01:01 30 RNA-dependent RNA-polymerase (RdRp) 1440-1454 15-mer WGDGFISDHAFMDFK 0.7947 0.17 POSITIVE 0.0713
31 HLA-DRB3*01:01 31 RNA-dependent RNA-polymerase (RdRp) 36-50 15-mer KRPYLKNDNTAKVAI 0.8013 0.17 NEGATIVE -0.0081
32 HLA-DRB3*01:01 32 RNA-dependent RNA-polymerase (RdRp) 1441-1455 15-mer GDGFISDHAFMDFKI 0.7763 0.18 POSITIVE 0.0440
33 HLA-DRB3*02:02 33 RNA-dependent RNA-polymerase (RdRp) 1282-1296 15-mer RTTNYHFDTSPINQA 0.8028 0.18 NEGATIVE -0.3431
34 HLA-DRB1*15:01 34 RNA-dependent RNA-polymerase (RdRp) 591-605 15-mer PETLTKYGDLDLQRI 0.8865 0.18 NEGATIVE -0.6085
35 HLA-DRB4*01:01 35 RNA-dependent RNA-polymerase (RdRp) 465-479 15-mer KTNLEMVLNDKAISP 0.7659 0.19 NEGATIVE -1.0173
36 HLA-DRB4*01:01 36 RNA-dependent RNA-polymerase (RdRp) 1746-1760 15-mer GEGLSMETTDATQKT 0.7763 0.19 NEGATIVE -0.2979
37 HLA-DRB4*01:01 37 RNA-dependent RNA-polymerase (RdRp) 1385-1399 15-mer LMPTIKGQKTDQFLN 0.7772 0.19 NEGATIVE -0.6220
38 HLA-DRB1*15:01 38 RNA-dependent RNA-polymerase (RdRp) 590-604 15-mer FPETLTKYGDLDLQR 0.8831 0.19 NEGATIVE -0.5655
39 HLA-DRB1*07:01 39 RNA-dependent RNA-polymerase (RdRp) 18-32 15-mer LKGVISFSETNAIGS 0.8890 0.19 POSITIVE 0.0427
40 HLA-DRB3*02:02 40 RNA-dependent RNA-polymerase (RdRp) 1283-1297 15-mer TTNYHFDTSPINQAL 0.7968 0.20 NEGATIVE -0.4797
41 HLA-DRB1*03:01 41 RNA-dependent RNA-polymerase (RdRp) 1360-1374 15-mer LVDKITSDQHIFSPD 0.9307 0.20 NEGATIVE -0.5392
42 HLA-DRB1*03:01 42 RNA-dependent RNA-polymerase (RdRp) 761-775 15-mer LDEVKADYRLAVKML 0.9326 0.20 NEGATIVE -0.1174
43 HLA-DRB5*01:01 1 Protein M2-1 53-67 15-mer ADGLSIISGAGREDR 0.8064 0.12 POSITIVE 0.0390
44 HLA-DRB4*01:01 2 Protein M2-1 155-169 15-mer LKKLAKLIIDLSAGA 0.7883 0.18 POSITIVE 0.0849
45 HLA-DRB1*07:01 3 Protein M2-1 31-45 15-mer PDRYLLIRSNYLLNQ 0.8923 0.19 POSITIVE 0.3165
46 HLA-DRB5*01:01 4 Protein M2-1 52-66 15-mer RADGLSIISGAGRED 0.7272 0.23 POSITIVE 0.1582
47 HLA-DRB4*01:01 5 Protein M2-1 154-168 15-mer KLKKLAKLIIDLSAG 0.7473 0.23 POSITIVE 0.1010
48 HLA-DRB4*01:01 6 Protein M2-1 156-170 15-mer KKLAKLIIDLSAGAD 0.6831 0.30 POSITIVE 0.1948
49 HLA-DRB1*07:01 7 Protein M2-1 30-44 15-mer WPDRYLLIRSNYLLN 0.8546 0.30 POSITIVE 0.6174
50 HLA-DRB5*01:01 8 Protein M2-1 54-68 15-mer DGLSIISGAGREDRT 0.6456 0.46 POSITIVE 0.2333
51 HLA-DRB3*02:02 9 Protein M2-1 38-52 15-mer RSNYLLNQLLRNTDR 0.6698 0.46 NEGATIVE -0.3169
52 HLA-DRB4*01:01 10 Protein M2-1 153-167 15-mer EKLKKLAKLIIDLSA 0.5790 0.47 POSITIVE 0.3450
53 HLA-DRB3*01:01 11 Protein M2-1 79-93 15-mer VQGYIDDNQSITKAA 0.6708 0.49 NEGATIVE -0.1358
54 HLA-DRB5*01:01 1 Major Surface Protein 174-188 15-mer ATTFRMSSTGKRPTT 0.8800 0.05 POSITIVE 0.0979
55 HLA-DRB5*01:01 2 Major Surface Protein 173-187 15-mer RATTFRMSSTGKRPT 0.8542 0.07 POSITIVE 0.3206
56 HLA-DRB5*01:01 3 Major Surface Protein 172-186 15-mer RRATTFRMSSTGKRP 0.7515 0.22 NEGATIVE -0.0335
57 HLA-DRB5*01:01 4 Major Surface Protein 175-189 15-mer TTFRMSSTGKRPTTT 0.7216 0.25 POSITIVE 0.2767
58 HLA-DRB5*01:01 5 Major Surface Protein 22-36 15-mer IRAIDMLKARVKNRV 0.6823 0.35 POSITIVE 0.0710
59 HLA-DRB5*01:01 6 Major Surface Protein 21-35 15-mer NIRAIDMLKARVKNR 0.6787 0.37 NEGATIVE -0.2645
60 HLA-DRB1*07:01 1 Protein M2-2 41-55 15-mer ALSDGIVKSHTNIYN 0.5573 2.00 NEGATIVE -0.4065
61 HLA-DRB4*01:01 2 Protein M2-3 20-34 15-mer GPVFITIEVDEMIWT 0.2271 3.20 POSITIVE 0.3671
62 HLA-DRB1*07:01 3 Protein M2-4 43-57 15-mer SDGIVKSHTNIYNCY 0.4293 3.40 NEGATIVE -0.1395
63 HLA-DRB1*07:01 4 Protein M2-5 42-56 15-mer LSDGIVKSHTNIYNC 0.4328 3.40 NEGATIVE -0.3917
64 HLA-DRB1*03:01 5 Protein M2-6 41-55 15-mer ALSDGIVKSHTNIYN 0.4079 3.50 NEGATIVE -0.4065
65 HLA-DRB3*01:01 6 Protein M2-7 41-55 15-mer ALSDGIVKSHTNIYN 0.1436 3.90 NEGATIVE -0.4065
66 HLA-DRB1*03:01 7 Protein M2-8 43-57 15-mer SDGIVKSHTNIYNCY 0.3612 4.00 NEGATIVE -0.1395
67 HLA-DRB1*15:01 1 Fusion Glycoprotein 162-176 15-mer VRELKDFVSKNLTRA 0.8909 0.16 NEGATIVE -0.2181
68 HLA-DRB4*01:01 2 Fusion Glycoprotein 63-77 15-mer GPSLIKTELDLTKSA 0.7834 0.18 NEGATIVE -0.2963
69 HLA-DRB5*01:01 3 Fusion Glycoprotein 131-145 15-mer ESEVTAIKNALKTTN 0.7724 0.20 NEGATIVE -0.6381
70 HLA-DRB1*03:01 4 Fusion Glycoprotein 415-429 15-mer ADTVTIDNTVYQLSK 0.9175 0.26 NEGATIVE -0.3028
71 HLA-DRB4*01:01 5 Fusion Glycoprotein 62-76 15-mer DGPSLIKTELDLTKS 0.7079 0.28 NEGATIVE -0.6801
72 HLA-DRB5*01:01 6 Fusion Glycoprotein 130-144 15-mer LESEVTAIKNALKTT 0.7116 0.28 NEGATIVE -0.4541
73 HLA-DRB1*07:01 7 Fusion Glycoprotein 119-133 15-mer TAGVAIAKTIRLESE 0.8613 0.28 NEGATIVE -0.0964
74 HLA-DRB4*01:01 8 Fusion Glycoprotein 200-214 15-mer FLNVVRQFSDNAGIT 0.6957 0.30 NEGATIVE -0.0633
75 HLA-DRB5*01:01 9 Fusion Glycoprotein 152-166 15-mer GNGVRVLATAVRELK 0.6934 0.33 POSITIVE 0.2823
76 HLA-DRB1*15:01 10 Fusion Glycoprotein 161-175 15-mer AVRELKDFVSKNLTR 0.8499 0.33 NEGATIVE -0.3827
77 HLA-DRB1*03:01 11 Fusion Glycoprotein 218-232 15-mer SLDLMTDAELARAVS 0.8976 0.34 NEGATIVE -0.0671
78 HLA-DRB4*01:01 12 Fusion Glycoprotein 199-213 15-mer RFLNVVRQFSDNAGI 0.6421 0.39 NEGATIVE -0.2017
79 HLA-DRB1*07:01 13 Fusion Glycoprotein 118-132 15-mer VTAGVAIAKTIRLES 0.8256 0.41 POSITIVE 0.0017
80 HLA-DRB1*03:01 14 Fusion Glycoprotein 217-231 15-mer ISLDLMTDAELARAV 0.8630 0.50 NEGATIVE -0.0333
81 HLA-DRB1*15:01 1 Small Hydrophobic Protein 95-109 15-mer KRLIQRYTDSVINKD 0.9525 0.03 POSITIVE 0.2601
82 HLA-DRB1*15:01 2 Small Hydrophobic Protein 94-108 15-mer FKRLIQRYTDSVINK 0.9214 0.08 POSITIVE 0.3120
83 HLA-DRB3*01:01 3 Small Hydrophobic Protein 19-33 15-mer LKKIIKDHSGKVLIA 0.7812 0.18 POSITIVE 0.0838
84 HLA-DRB3*01:01 4 Small Hydrophobic Protein 18-32 15-mer HLKKIIKDHSGKVLI 0.7557 0.22 NEGATIVE -0.1494
85 HLA-DRB1*15:01 5 Small Hydrophobic Protein 96-110 15-mer RLIQRYTDSVINKDT 0.8471 0.33 POSITIVE 0.1270
86 HLA-DRB3*01:01 6 Small Hydrophobic Protein 17-31 15-mer THLKKIIKDHSGKVL 0.7105 0.34 NEGATIVE -0.3663
87 HLA-DRB4*01:01 7 Small Hydrophobic Protein 15-Jan 15-mer MITLDVIKSDGSSKT 0.6319 0.41 NEGATIVE -0.1182
88 HLA-DRB3*02:02 1 Matrix Protein 36-50 15-mer FPLFQANTPPAVLLD 0.9475 0.01 NEGATIVE -0.1758
89 HLA-DRB3*02:02 2 Matrix Protein 84-98 15-mer LPKKFEVNATVALDE 0.9749 0.01 NEGATIVE -0.5496
90 HLA-DRB3*02:02 3 Matrix Protein 85-99 15-mer PKKFEVNATVALDEY 0.9768 0.01 NEGATIVE -0.3635
91 HLA-DRB3*02:02 4 Matrix Protein 83-97 15-mer VLPKKFEVNATVALD 0.9430 0.02 NEGATIVE -0.2522
92 HLA-DRB1*15:01 5 Matrix Protein 191-205 15-mer QAKIAPYAGLIMIMT 0.9302 0.06 POSITIVE 0.2374
93 HLA-DRB3*02:02 6 Matrix Protein 37-51 15-mer PLFQANTPPAVLLDQ 0.9019 0.07 NEGATIVE -0.1801
94 HLA-DRB3*02:02 7 Matrix Protein 35-49 15-mer WFPLFQANTPPAVLL 0.9076 0.07 NEGATIVE -0.2147
95 HLA-DRB3*02:02 8 Matrix Protein 86-100 15-mer KKFEVNATVALDEYS 0.9104 0.07 NEGATIVE -0.4050
96 HLA-DRB1*07:01 9 Matrix Protein 58-72 15-mer TTLYAASQSGPILKV 0.9339 0.08 NEGATIVE -0.1404
97 HLA-DRB1*07:01 10 Matrix Protein 57-71 15-mer ITTLYAASQSGPILK 0.9352 0.08 POSITIVE 0.0770
98 HLA-DRB3*02:02 11 Matrix Protein 34-48 15-mer IWFPLFQANTPPAVL 0.8851 0.10 POSITIVE 0.0995
99 HLA-DRB3*02:02 12 Matrix Protein 67-81 15-mer GPILKVNASAQGAAM 0.8630 0.11 NEGATIVE -0.4476
100 HLA-DRB3*02:02 1 Phosphoprotein 22-36 15-mer DILFMGNEAAKLAEA 0.9085 0.07 POSITIVE 0.4455
101 HLA-DRB3*02:02 2 Phosphoprotein 21-35 15-mer KDILFMGNEAAKLAE 0.8672 0.11 POSITIVE 0.2754
102 HLA-DRB3*02:02 3 Phosphoprotein 124-138 15-mer KKVSFTPNEPGKYTK 0.7004 0.34 NEGATIVE -0.1429
103 HLA-DRB3*02:02 4 Phosphoprotein 20-24 15-mer GKDILFMGNEAAKLA 0.6975 0.35 POSITIVE 0.2106
104 HLA-DRB3*02:02 5 Phosphoprotein 23-37 15-mer ILFMGNEAAKLAEAF 0.6772 0.41 POSITIVE 0.3792
105 HLA-DRB3*02:02 6 Phosphoprotein 125-139 15-mer KVSFTPNEPGKYTKL 0.6705 0.46 NEGATIVE -0.3024
106 HLA-DRB5*01:01 1 Nucleoprotein 345-359 15-mer TELFSAAESYAKSLK 0.8544 0.07 NEGATIVE -0.2143
107 HLA-DRB1*07:01 2 Nucleoprotein 88-102 15-mer SEVQVVLTRTYSLGK 0.8797 0.21 POSITIVE 0.2924
108 HLA-DRB5*01:01 3 Nucleoprotein 344-358 15-mer NTELFSAAESYAKSL 0.7478 0.22 NEGATIVE -0.1134
109 HLA-DRB1*07:01 4 Nucleoprotein 89-103 15-mer EVQVVLTRTYSLGKV 0.8737 0.23 POSITIVE 0.3001
110 HLA-DRB1*07:01 5 Nucleoprotein 55-69 15-mer KHADYKYAAEIGIQY 0.8503 0.32 NEGATIVE -0.1668
111 HLA-DRB5*01:01 6 Nucleoprotein 343-357 15-mer PNTELFSAAESYAKS 0.6943 0.33 POSITIVE 0.3539
112 HLA-DRB4*01:01 7 Nucleoprotein 62-76 15-mer AAEIGIQYISTALGS 0.6483 0.36 POSITIVE 0.1166
113 HLA-DRB1*07:01 8 Nucleoprotein 56-70 15-mer HADYKYAAEIGIQYI 0.8293 0.36 NEGATIVE -0.0308
114 HLA-DRB3*02:02 9 Nucleoprotein 79-93 15-mer VQQILRNSGSEVQVV 0.6901 0.38 NEGATIVE -0.3418
115 HLA-DRB3*02:02 10 Nucleoprotein 78-92 15-mer RVQQILRNSGSEVQV 0.6718 0.43 NEGATIVE -0.3127
116 HLA-DRB1*07:01 11 Nucleoprotein 54-68 15-mer AKHADYKYAAEIGIQ 0.8118 0.44 NEGATIVE -0.0667
117 HLA-DRB5*01:01 12 Nucleoprotein 346-360 15-mer ELFSAAESYAKSLKE 0.6378 0.47 NEGATIVE -0.6694
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